sPta717 Genome

sPta717 Genome

Substituted genome sequence of P. Tremula x alba 717-1B4, created by

introducing genomic variants into the P. trichocarpa reference genome.

 

Probe Search Blast Search Gene Model Search

 

Citations

Zhou X, Jacobs TB, Xue LJ, Harding SA, Tsai CJ (2015) New Phytologist 208: 298-301.
Xue LJ, Alabady MS, Mohebbi M, Tsai CJ (2015) Tree Genetics & Genomics 11: 82.

 

Download the sPta717 v1.1 sequence and annotation files:

sPta717_v1.1.fa.gz

sPta717_v1.1.gene.gff3.gz

sPta717_v1.1_gene_model.fa.gz

sPta717_v1.1_promoter.fa.gz

sPta717_v1.1_transcript.fa.gz

sPta717_v1.1_degenerate_gene_model.fa.gz

sPta717_v1.1_degenerate_promoter.fa.gz

sPta717_v1.1_degenerate_transcript.fa.gz

 

Download pre-designed, SNP-free gRNAs for 38,509 gene models:

sPta717gRNAs.csv

(from Zhou et al. 2015 New Phytologist DOI: 10.1111/nph.13470).

 

Download the Aspen CRISPR designer program:

AspenCRISPRdesigner.tar (Perl Scripts and help document)

 

Data Sets:

sPta717_v1.1.vcf.gz (Allelic variants of sPta717_v1.1)

Ptrichocarpa_v3.0.vcf.gz (Variants between Populus trichocarpa and sPta717)

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